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Bio-DB-HTS v2.11 (versionsuffix: '-Perl-5.28.0'): foss/2018bīioperl is the product of a community effort to produce Perl code which is useful in biology.Read files using HTSlib including BAM/CRAM, Tabix and BCF database files The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage.
Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.
Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
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These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention.
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Some of our software is also provided by other means, including the use of Singularity containers. Most of our software is made available through software modules (see our guide for instructions on loading and using modules). We provide a range of pre-installed scientific software.